Computational Explorations

• Matlab Intro  
• Chapter 2  
• Chapter 3  
• Chapter 5  
• Chapter 7  
• Chapter 17  
• Chapter 19  
• Chapter 20  
• Chapter 21  

Data

This Zip file contains the data for all figures.

Mathematica & Matlab

• Matlab Resources: MatLab Tutorial  
• Chapter 2 Computational Exploration: Sizing up <i>E. coli</i>  
• Chapter 2 Computational Exploration: Counting mRNA and Proteins by Dilution  
• Chapter 3 Computational Exploration: Timing <i>E. coli</i>  
• Chapter 3 Computational Exploration: Growth Curves and the Logistic Equation  
• Chapter 5 Computational Exploration: Determining the Spring Constant of an Optical Trap  
• Chapter 7 Computational Exploration: Determining Ion Channel Open Probabaility by Thresholding  
• Chapter 17 Computational Exploration: Numerical Solution of the Cable Equation  
• Chapter 18 Computational Exploration: Electrons in a Well of Finite Depth  
• Chapter 18 Figure: Figure 18.48  
• Chapter 18 Problem: Problem 18.7  
• Chapter 19 Computational Exploration: Extracting Level of Gene Expression from Microscopy Images  
• Chapter 19 Computational Exploration: The Gillespie Algorithm and Stochastic Models of Gene Regulation  
• Chapter 20 Computational Exploration: Scaling of Morphogen Gradients  
• Chapter 21 Computational Exploration: Searching the <E. coli> Genome for Binding Sites  

Hints for the Problems in Physical Biology of the Cell, Second Edition

This PDF provides both hints and strategies for attacking some of the more difficult end-of-chapter problems.

PowerPoint Presentations

These PowerPoint presentations contains all the figures from their relevant chapters.

• Chapter 1  
• Chapter 2  
• Chapter 3  
• Chapter 4  
• Chapter 5  
• Chapter 6  
• Chapter 7  
• Chapter 8  
• Chapter 9  
• Chapter 10  
• Chapter 11  
• Chapter 12  
• Chapter 13  
• Chapter 14  
• Chapter 15  
• Chapter 16  
• Chapter 17  
• Chapter 18  
• Chapter 19  
• Chapter 20  
• Chapter 21  
• Chapter 22